Virtual slide stage (VSS) method for viewing whole slide images

ABSTRACT

Embodiments provide slide navigation technology that addresses challenges in digital pathology of navigating and viewing high resolution slide images. Example systems comprise a virtual slide stage (VSS) having at least one sensor that detects user movement of a target placed on the VSS, and an input component, coupled to the VSS, which provides quick function movement control of the target via quick functions. The systems also comprise a connector component that connects the VSS to a user device and transmits output from the at least one sensor and input component to the user device. The systems further comprise a computer processor, in communication with the VSS, which processes the output using a computational model to generate data representing movement profiles of the target. The computer processor executes a software component, causing the output, translated based on the movement profiles, to be relayed via a viewing application on the user device.

RELATED APPLICATIONS

This application is a continuation of U.S. application Ser. No.15/730,296, filed Oct. 11, 2017, which claims the benefit of U.S.Provisional Application No. 62/442,403, filed on Jan. 4, 2017. Theentire teachings of the above applications are incorporated herein byreference.

FIELD OF INVENTION

The present invention is directed to a system, method, and apparatus fornavigation of virtual images.

BACKGROUND

Navigation of very high resolution Whole Slide Images (WSIs) in digitalpathology is challenging when attempted over extended sessions or timeperiods. The frequency and scale of mouse movements needed, theunfamiliarity of keyboard controls for navigating, and the gross-scalearm movements needed to use a touch screen with a sufficient resolutionfor a diagnostically relevant image are all barriers toward effectiveWSI navigation.

In contrast, reviewing slides using a microscope is a quick process,requiring very fine finger movements to scan a slide at an overviewlevel, then rapidly realigning and jumping to significantly highermagnifications. Microscope stages have fine controls for moving theslide in the horizontal and vertical (X & Y) directions, but manypathologists do not even use these controls, instead opting tomanipulate the slide directly with their fingertips.

SUMMARY

Embodiments of the present invention are directed to a Virtual SlideStage (VSS) method and system, which provide a solution that allows fora pathologist to effectively review a complete set of digital WholeSlide Images (WSIs) for a given case. This review of WSIs occurs in theplace of a review of the corresponding physical slides. The usabilityand ergonomics of the VSS closely emulate the process by which a userreviews a set of physical slides with a microscope. The VSS facilitatesthe user virtually reviewing WSIs for the given case by: (a) enablingswitching from one slide to the next via a quick function, (b) enablingnavigation within a slide via fine motor movements (physically similarto the movements that pathologists are accustomed to using for reviewingphysical slides), (c) quickly changing magnifications via a quickfunction, (d) flagging key slides for later reference via a quickfunction, and (e) navigating between focal planes (Z-stacks) on imageswith multiple captured focal planes. This virtual review facilitated bythe VSS has direct correlation to the steps in a physical review ofslides, which include: (a) placing one of a series of slides on thestage, (b) navigating within a slide by physically moving the slide, (c)changing magnifications by switching objectives with the microscopeturret, (d) flagging key slides with a permanent marker, and (e)adjusting the focal plane by adjusting the distance between an objectiveand the target.

Embodiments of the present invention provide slide navigation systems,methods, and devices that address challenges in digital pathology ofnavigating very high resolution slide images. These systems, methods,and devices enable virtually navigating and viewing Whole Slide Images(WSI), such that a pathologist may review a set of slides withoutphysically handling them, utilizing skills analogous to physicallyreviewing slides. The systems include a virtual slide stage (VSS) havingat least one sensor detecting user movement of a target placed on theVSS. The systems also include an input component, coupled to the VSS,which provides additional application movement control of the target viaquick functions. The systems further include a connector componentconnecting the VSS to a user device. The connector component isconfigured to transmit output from the at least one sensor and the inputcomponent to the user device. The systems also include a computerprocessor, in communication with the VSS, which computationallyprocesses the detected movement of the target relative to the VSS(transmitted output) using a computational model (movement profile) togenerate processed movement data representing the desired movement of aWSI image in the viewing application. The computer processor executes asoftware component, which causes the generated processed movement datato be relayed via the viewing application executing on the user device.

In some embodiments of the systems, the VSS is further configured with asurface on which the target rests, and either: (i) the at least onesensor is configured within the surface, or (ii) a camera is mounted tothe surface. In these embodiments of the systems, the at least onesensor of the VSS possesses sensitivity levels that enable detectingchanges in position of the target relative to the VSS, includingdetecting slight changes in the position. In these embodiments of thesystems, the computer processor may process the change in horizontal andvertical position of the target relative to the surface of the VSS, andmay further process rotation of the target relative to the surface ofthe VSS.

In some embodiments of the systems, the VSS is further coupled to anartificial light source, the target is an opaque slide, and the at leastone sensor includes at least one optical sensor that detect movement ofthe opaque slide by sensing light from the artificial light source. Insome embodiments of the systems, the target is a translucent slide, andthe at least one sensor includes at least one optical sensor thatdetects movement of the translucent slide by sensing ambient light. Insome embodiments of the systems, the target is a blank slide, and the atleast one sensor includes at least one infrared distance sensor thatdetects movement of the blank slide by sensing physical positioning ofthe blank slide.

In some embodiments of the systems, the target is an opaque slide, andthe at least one sensor detects movement of the opaque slide via acamera, wherein at least one of coloration and marking are applied tofacilitate the camera tracking and distinguishing the opaque slide fromthe VSS. In these embodiments of the systems, the camera may capture anew image of the target, and the computer processor calculates themovement of the target by comparing the captured new image to referencedata stored in computer memory communicatively coupled to the computerprocessor. In some embodiments of the systems, the target is magnetized,and the at least one sensor further includes a set of magnetometerspositioned below surface of the VSS. The set of magnetometers detectorientation and position of the magnetized target. In some embodimentsof the systems, the at least one sensor detects movement of atouchscreen or touchpad, rather than the target.

In some embodiments of the systems, the quick functions may enable oneor more keys or buttons coupled to the input component that is mountedor otherwise connected to the VSS, the one or more keys or buttons beingat least one of physically-enabled or digitally-enabled components. Insome embodiments of the systems, the quick functions may enable a dialor potentiometer, and accept at least one of: (i) digital inputs thatenable one or more fixed settings and (ii) analog inputs that enablescrolling between discrete settings. In some embodiments of the systems,the quick functions may enable at least one of: gestures, cameradetection, touchscreen, or touchpad. In some embodiments of the systems,the quick functions are in communication with the user device. In eachof these embodiments, the quick functions enable: (i) switching betweenslides using the quick functions, (ii) navigating within a slide viafine motor movements, (iii) changing magnifications or resolutions usingthe quick functions, (iv) flagging key slides using the quick functions,and (v) switching between focal planes that have been captured andstored in the WSI.

In some embodiments of the systems, the connector component couples theVSS to the user device via at least one of: a USB connection, awired-network, a WiFi network, and Bluetooth. In some embodiments of thesystems, the processing of the detected movement is performed by thecomputer processor positioned either: (i) within the VSS or (ii) withinthe user device. In some embodiments of the systems, the processing isperformed by the connected computer's processor (e.g., within the userdevice). In other embodiments, the processing is performed by aprocessor contained within the VSS. The processing transforms thedetected data from the sensors and quick functions according to a useror system configuration that implements a movement profile, a model ofmovement of the VSS with respect to the movement of the target. Themovement profile may be implemented to (i) remain linear to the movementof the target independent of magnification, (ii) geometrically scale toincrease or decrease the responsiveness of the viewing applicationrelative to the movement, or (iii) be user-configured, non-linear, andnon-geometric. Once transformed, the movement and quick function data istransferred to the viewing application via at least one of (i) a nativesoftware or library, including a device driver, and (ii) a networkingcomponent, including a web server or websockets.

The methods of these embodiments detect, by at least one sensor coupledto a virtual slide stage (VSS), user movement of a target placed on theVSS. The methods further receive movement of the target by the user viaquick functions, and transmit output from the at least one sensor andquick functions to the user device. The methods process the output usinga model to generate processed movement data representing movementprofiles of the target, and relay the output, translated based on themovement profiles, via a viewing application configured on the userdevice.

The devices of these embodiments include a virtual slide stage (VSS)having at least one sensor detecting user movement of a target placed onthe VSS. The devices further include an input, coupled to the VSS, whichprovides quick function movement control of the target via quickfunctions. The devices further include a communication connection whichconnects the VSS to a user device and transmits output from the at leastone sensor and the input component to the user device. The devices alsoinclude a computer processor, in communication with the VSS, whichcomputationally processes the transmitted VSS output using acomputational model to generate processed movement data representingmovement profiles of the target. The computer processor executessoftware, which causes the transmitted VSS output translated based onthe movement profiles, to be relayed via a viewing software applicationexecuting on the user device.

BRIEF DESCRIPTION OF THE DRAWINGS

The foregoing will be apparent from the following more particulardescription of example embodiments, as illustrated in the accompanyingdrawings in which like reference characters refer to the same partsthroughout the different views. The drawings are not necessarily toscale, emphasis instead being placed upon illustrating embodiments.

FIG. 1 illustrates one implementation of the VSS method/system, in whicha target slide is placed on a flat stage, and the slide's movements aredetected by optical sensors.

FIG. 2 illustrates different embodiments of sensors in the VSSmethod/system.

FIG. 3 illustrates different embodiments of quick functions in the VSSmethod/system.

FIG. 4 illustrates is an example digital processing environment in whichembodiments of the present invention may be implemented.

FIG. 5 illustrates is a block diagram of internal structure of acomputer/computing node of FIG. 4.

DETAILED DESCRIPTION

A description of example embodiments follows.

The virtual slide stage (VSS) system and method of the present inventionprovides the primary purpose of quickly and efficiently viewing andnavigating one or more Whole Slide Images (WSIs), representing apathology case. Since WSIs are digital representations of physicalslides, the viewing location is independent of the slide location.

A VSS system/device includes several basic components. The VSS systemincludes one or more sensors that detect the user's motion/movement of atarget. The VSS system further includes an input component for providingnavigation control and functionality related to the target to the user(quick functions). The VSS system also includes a connection componentthat connects the VSS to a computer system of the user and transmitsnavigation outputs to a computer system (connectivity). The VSS systemfurther includes a processor configured to process navigation outputsfrom the navigation component (one or more sensors) and the inputcomponent. The processor further interprets the VSS system's outputsusing a preset or user-configured motion/movement model, which is usedto implement in software a movement profile to translate (transform) themotion/movement of the target for viewing via an application configuredat the user's computer system.

Multiple embodiments of the VSS system will be described, but apreferred embodiment utilizes an opaque target (slide) of roughly thesame dimensions as a typical glass slide. The opaque target is placed ona Virtual Slide Stage (VSS) and one or more sensors of different typesdetect fine (sub-millimeter or micron) movements. Additionally, the VSScan optionally receive additional quick functions for navigating thetarget, including allowing for navigation between resolutions, differentWSIs, or other types of user controls. The VSS system, coupled with theprocessing for the various inputs, is then paired/coupled with a user'scomputer and software configured on the user's computer to navigate thetarget image.

In a preferred embodiment, the VSS system contains one or more opticalsensors (similar to an optical mouse) to detect movement of the target,and a series of buttons to implement quick functions to further controlmovement/navigation of the target. These buttons are connected to theVSS (either directly or via a cable). In other embodiments, the buttonsmay be replaced with any other input controls without limitation. Aprocessor within the VSS system translates the input (movement of thetarget) via a model into a movement profile and transmits the translatedinput (movement profile) to the user's computer via a USB connection, asshown in FIG. 1.

FIG. 1 illustrates a preferred embodiment of the VSS system and method.The VSS stage (110) contains sensors (120) to detect the relativeposition and orientation of a “target” or blank slider (130), which canbe glass, plastic, or other material, placed on the VSS (110). Thetarget can be any reasonable size, but to best replicate slide movementsunder a microscope, a 1×3×0.1 inch target (blank slide) can be used toprovide familiarity to the user. The stage (110) is a flat surface, onwhich the target (blank slide) rests, and within which the sensors aremounted. Connected either within the same stage or another componentconnected via a cable (140), a series of quick functions (150) areimplemented. The VSS itself is connected to a user's computer (170) viaa connection (160), which may be physical or wireless.

Sensors

FIG. 2. illustrates different embodiments of the sensors (120) fromFIG. 1. In a preferred embodiment, the sensors (210) are opticalsensors, each detecting/sensing illumination from one or more lightsources or lasers. The sensors are sensitive enough to detect tiny(slight) changes in the position of the blank relative to the stage. Inan embodiment with a single optical sensor, the VSS can process thechange in the X and Y (horizontal and vertical) position of the target(blank slide), relative to the surface of the VSS. In an embodiment withmultiple optical sensors, the VSS can process the change in the X and Yposition of the target (blank slide), as well as the rotation of theblank relative to the surface of the VSS (110).

In another embodiment including optical sensors, in place of thecombination of light sources (or lasers) and an opaque target, asemi-translucent target slide can be used, allowing ambient light toreach the one or more optical sensors. The use of ambient light allowsthese embodiments to forego the use of a light source (or laser).

In another embodiment of the sensors, infrared distance sensors can beused in place of optical sensors. The distance sensor are placed tosense the target (blank slide), determining the X/Y position androtation of the target, thereby replacing the optical sensors. In thisembodiment, a thicker target (blank slide) is used. In an embodimentusing infrared distance sensors, a pair of sensors mounted in parallelwould capture/sense one vertical face of the blank slide. A second pairof parallel sensors would be mounted perpendicular to the first set,capturing/sensing an additional face of the blank slide. This capturingof the vertical faces allows the calculation of the X/Y position of theblank slide, as well as rotation of the blank slide.

In another embodiment of the sensors, sonar (lidar) sensors are used inplace of the optical sensors. These sensors use the physical positioningdescribed in the infrared embodiment to calculate X/Y position of theblank slide.

In another embodiment, the VSS (110) may use a highly sensitive touchscreen (230) (such as those found on tablets or smartphones) or touchsensor (similar to a touch pad from a laptop) in place of the blankslide and associated sensors. This implementation may determine X and Yposition from a user's finger interfacing with the touch screen.Two-finger use would allow the VSS (110) to capture X/Y position androtation from the user without use of a blank slide.

In another embodiment of the sensors, the VSS (110) may use a camera(240) to capture the relative movement of a target (slide). The targetmay be an opaque slide that may be marked with specific icons. In oneprocessing method, the VSS camera captures a new image and calculatesthe movement of the target (opaque slide) by comparing this new image toreference data in memory communicatively coupled to the VSS. Thisreference data may be one or more video frames recorded from an earlierpoint in time. In a second processing method, the movement of the targetis relative to either the absolute field of view of a camera image, oris relative to some demarcation (e.g., a box drawn on the surface of theVSS) physically marked on the VSS. If the target is marked with icons,those icons' positions in the image may be used for processing in eitherprocessing methodology. Any new images taken may also be stored asfuture reference data in memory communicatively coupled to the VSS.

In another embodiment of the sensors, a set of magnetometers (220) insome configuration are laid out below the surface of the VSS, and thetarget is magnetized or contains small magnets. The orientation andposition of the magnetized target can then be determined by themagnetometers.

Quick Functions

FIG. 3. illustrates a few embodiments of the Quick Functions (150). Inthe preferred embodiment, the Quick Functions are wholly or partiallyimplemented by a number of keys (310) (for example, 10 keys) to performsome or all of the following functions: a) switch to next slide; b)switch to previous slide; c) flag a slide (i.e., note that the slide isof interest); d) center a slide (in the viewing application on theuser's computer system); e-h) change magnifications; i-j) togglingbetween available focal planes. In one embodiment, magnifications mayinclude 1.0×, 2.5×, 10×, and a maximum (MAX) magnification, usually 20×or 40×, depending on the maximum resolution of the device that capturedthe image. These keys can be either contained within the structure ofthe VSS (as shown) or can be on a keypad connected to the VSS via acable.

In another embodiment, the Quick Functions may be wholly or partiallyimplemented by alternative input devices such as dials, potentiometers,or wheels (320) to control the zoom, either digitally (at presetmagnifications) or in a more analog manner (scrolling non-presetamounts).

In another embodiment, one may use voice commands in combination with,or as replacements for all Quick Functions.

In embodiments using a camera or a touch screen (330), such embodimentsmay include the use of gestures as a replacement for one or more of theQuick Functions.

In another embodiment, the Quick Functions are implemented as a mixtureof other embodiment implementations (such as a wheel for magnificationand buttons for other Quick Functions).

In another embodiment, there are no Quick Functions implemented.

Digital Processing Environment

FIG. 4 illustrates an example implementation of a slide navigationsystem according to an embodiment of the invention. The slide navigationsystem, which enables quickly and efficiently navigating of one or moreslides, may be implemented in a software, firmware, or hardwareenvironment. FIG. 4 illustrates one such example digital processingenvironment in which embodiments of the present invention may beimplemented. Client computers/devices 50 and server computers/devices 60(or a cloud network 70) provide processing, storage, and input/outputdevices executing application programs and the like. In otherembodiments, client computer/devices 50 are locally connected (e.g., viaa USB connection) across physical bounds to a processor on the servercomputers/devices 60 for communicating input to the servercomputers/devices 60.

Client computer(s)/devices 50 can also be linked through communicationsnetwork 70 (e.g., via interface 107) to other computing devices,including other client devices/processes 50 and server computer(s) 60.Communications network 70 can be part of a remote access network, aglobal network (e.g., the Internet), cloud computing servers or service,a worldwide collection of computers, Local area or Wide area networks,and gateways that currently use respective protocols (TCP/IP, Bluetooth,etc.) to communicate with one another. Other electronic device/computernetwork architectures are suitable.

Client computers/devices 50 may include a Virtual Slide Stage (VSS), asshown in FIG. 1, containing one or more of lasers, sensors,magnetometers, and cameras (as shown FIG. 2) to detect navigation of atarget slide (e.g., target slide) placed on an area of the VSS 50. TheVSS 50 may also contain Quick Function buttons (as shown in FIG. 3), awheel, a touch screen, voice controls, or such to allow navigation inrelation to the slide. Server computers 60 may be a user computerdevice, which receives input communication from the VSS 50 (e.g., via aUSB, WiFi, Bluetooth, or any other network connector) for presentationon the user computer device 60. For example, embodiments connect the VSSvia a USB connection to a local processor on the computers 60 (user'scomputer). In other embodiments, the VSS may be configured as a “smartdevice” that connects the VSS via the communications network 70 to theuser's computer via a peer connection. The VSS 50 may communicateinformation regarding the position and orientation of the target to theuser computer device 60. For example, the VSS 50 may communicateinformation related to the Quick Functions, such as moving to previousor next slide, flagging a slide, centering a slide, changingmagnification/resolution, switching focal planes, and the like to theuser device 60. The server computers may not be separate servercomputers but part of cloud network.

FIG. 5 is a block diagram of the internal structure of acomputer/computing node (e.g., client processor/device 50 or servercomputers 60) in the processing environment of FIG. 4, which may be usedto facilitate processing audio, image, video or data signal information.Each computer 50, 60 in FIG. 5 contains system bus 79, where a bus is aset of hardware lines used for data transfer among the components of acomputer or processing system. The system bus 79 is essentially a sharedconduit that connects different elements of a computer system (e.g.,processor, disk storage, memory, input/output ports, network ports,etc.) that enables the transfer of information between the elements.

Attached to system bus 79 is I/O device interface 82 for connectingvarious input and output devices (e.g., keyboard, mouse, wheels,buttons, touch screens, displays, printers, speakers, voice controls,VSS, Quick Functions, etc.) to the computer 50, 60. Network interface 86allows the computer to connect to various other devices attached to anetwork (e.g., network 70 of FIG. 4), such as sensors, cameras, lasers,magnetometers of FIG. 2. Memory 90 provides volatile storage forcomputer software instructions 92 and data 94 used to implement anembodiment of the present invention (e.g., code detailed above).Software components 92, 94 of the slide navigation system describedherein may be configured using any programming language, including anyhigh-level, object-oriented programming language.

In an example mobile implementation, a mobile agent implementation ofthe invention may be provided. A client-server environment can be usedto enable mobile configuration of the capturing of the navigation ofslide images. It can use, for example, the XMPP protocol to tether a 50to VSS 50. The server 60 can then issue commands via the mobile phone onrequest. The mobile user interface framework to access certaincomponents of the slide navigation system may be based on XHP, Javelinand WURFL. In another example mobile implementation for OS X, iOS, andAndroid operating systems and their respective APIs, Cocoa and CocoaTouch may be used to implement the client side components 115 usingObjective-C or any other high-level programming language that addsSmalltalk-style messaging to the C programming language.

Disk storage 95 provides non-volatile storage for computer softwareinstructions 92 and data 94 used to implement an embodiment of the slidenavigation system. The system may include disk storage accessible to theserver computer 60. The server computer (e.g., user computing device) orclient computer (e.g., sensors) may store information, such as logs,regarding the navigation of the slide navigation, including position andorientation of one or more slides. Central processor unit 84 is alsoattached to system bus 79 and provides for the execution of computerinstructions.

In one embodiment, the processor routines 92 and data 94 are a computerprogram product (generally referenced 92), including a computer readablemedium (e.g., a removable storage medium such as one or more DVD-ROM's,CD-ROM's, diskettes, tapes, etc.) that provides at least a portion ofthe software instructions for the slide navigation system. Executinginstances of respective software components of the slide navigationsystem, may be implemented as computer program products 92, and can beinstalled by any suitable software installation procedure, as is wellknown in the art. In another embodiment, at least a portion of thesoftware instructions may also be downloaded over a cable, communicationand/or wireless connection, via for example, a browser SSL session orthrough an app (whether executed from a mobile or other computingdevice). In other embodiments, the invention programs are a computerprogram propagated signal product 107 embodied on a propagated signal ona propagation medium (e.g., a radio wave, an infrared wave, a laserwave, a sound wave, or an electrical wave propagated over a globalnetwork such as the Internet, or other network(s)). Such carrier mediumor signals provide at least a portion of the software instructions forthe routines/program 92 of the slide navigation system.

In alternate embodiments, the propagated signal is an analog carrierwave or digital signal carried on the propagated medium. For example,the propagated signal may be a digitized signal propagated over a globalnetwork (e.g., the Internet), a telecommunications network, or othernetwork. In one embodiment, the propagated signal is a signal that istransmitted over the propagation medium over a period of time, such asthe instructions for a software application sent in packets over anetwork over a period of milliseconds, seconds, minutes, or longer. Inanother embodiment, the computer readable medium of computer programproduct 92 is a propagation medium that the computer system 50 mayreceive and read, such as by receiving the propagation medium andidentifying a propagated signal embodied in the propagation medium, asdescribed above for computer program propagated signal product.

Generally speaking, the term “carrier medium” or transient carrierencompasses the foregoing transient signals, propagated signals,propagated medium, storage medium and the like.

In other embodiments, the program product 92 may be implemented as a socalled Software as a Service (SaaS), or other installation orcommunication supporting end-users.

Connectivity

In a preferred embodiment for connectivity, the VSS will have a USBconnector to connect with the user's computer.

In another embodiment of connectivity, the USB connector that connectsthe VSS to the user's computer can be an ethernet network connector.

In another embodiment of connectivity, the USB connector that connectsthe VSS to the user's computer can be replaced by a bluetooth networkconnection.

In another embodiment of connectivity, the USB connector that connectsthe VSS to the user's computer can be replaced by a WiFi networkconnection.

VSS Signal Processing

In a preferred embodiment, the processing of the inputs is performed bya processor contained within the VSS itself.

In another embodiment, the VSS may use USB- or network-addressablesensors, allowing a consuming or viewing software application to accessdata directly from said sensors. In this embodiment, the VSS does nothave a local processor. Instead, the processing of the inputs isperformed by the processor in the user's computer.

In either processing embodiment, measured inputs by the VSS sensors ofthe target are transferred into relative movements (relative to the VSS)that are transferred to the user's computer. The user's computer mayhave a software component installed and running to relay informationfrom the VSS to the consuming or viewing software application, alsorunning on the user's computer. In one embodiment, the softwarecomponent is a device driver. In another embodiment, the softwarecomponent is a server component that performs internal networking ordata transfer.

In one embodiment, the component will implement Web Sockets, whichallows for one or more software components to connect to a Web Socketserver, and every connected application (e.g., consuming and viewingapplications) of on the user's computer may receive the data packetssent by other connected applications. In this manner, the processorsends both key press and positional information to the connectedapplications via the server.

Signal Transformation and Modeling

The movements of the system corresponding to the target movements can bemodeled in multiple ways (and formatted in a movement profile of thetarget). First, the modeled movements may remain linear to the targetslide's movement (independent of magnification). Second, the modeledmovements can be scaled geometrically to increase or decrease theresponsiveness of the application relative to the movement of thetarget. Third, a custom movement profile may be created that hasuser-defined scaling, where the scaling can vary for different ranges ofmagnification (and thus is neither linear nor geometric).

In the first instance (linear), the modeled movement of the entire rangeof the WSI image is controlled by the movement of the target (slide)within an approximately 1 inch target region. This means that at lowresolutions (e.g., 1×), moving the target ½ inch may translate to about500 pixels worth of movement on the screen, but at higher resolutions(e.g., 20×), the same movement would correspond to about 10,000 pixels.Regardless of the magnification, the same movement should navigate theuser to the same location on the slide.

In the second instance (scaled), the modeled movement of the targetslide can be modified to produce finer movements at higher resolutions.The ½ inch movement described above may still be the equivalent of 500pixels at 1×, but at 20× magnification, the movement could remain at 500pixels or be scaled by some other arbitrary factor to produce a finerslide navigation (e.g., 1000 pixels).

In an example embodiment, magnification mappings could be configured ona per-user basis. The scaling can be applied as a user or system levelconfiguration in the VSS or in the consuming or viewing application, ascan the movement/motion models.

Navigation Analytics

Information related to additional context verification test/factors usedin determining the performance of navigating a slide at the VSS (e.g.,user moving slide or using quick functions to navigate the slide),including information regarding which tests/factors are successfullyapplied versus those that were processed but were not successfullyapplied can be used to improve the quality of the VSS. For example, ananalytics tool (such as a web analytics tool or BI tool) may producevarious metrics such as measures of additional context verificationfactor/test success based on the combination of other criteria (e.g.variables associated with level of user's movement of the slide), andfilter these results by time of the day or time period or location. Theanalytics tools may further filter results of physically moving a slideby the user versus the user using quick functions to move the slide. Theanalytics tools may further filter results of switching between slides,versus movement with the slide, changing magnifications, navigatingbetween focal planes, and the like. Such measures can be viewed pertest/factor to help improve the VSS and viewing application because theresults may be aggregated across a multitude of devices and users.

An analytics tool offers the possibility of associating otherquantitative data beside frequency data with a successful test/factorapplication. For instance, the results of high performance ininteractively navigating a target at the VSS could be joined against themetrics derived by an analytics system (such as a web analytics solutionor a business intelligence solution).

Furthermore, analytics data for interactive communication within onlinecontent for a user can be aggregated per type of user. For example, itcould be of interest to know which types of tests/factors are most orleast conducive to a high performance in the interactive communication,or on the contrary, applied to a low performance in the interactivecommunication.

The teachings of all patents, published applications and referencescited herein are incorporated by reference in their entirety.

While example embodiments have been particularly shown and described, itwill be understood by those skilled in the art that various changes inform and details may be made therein without departing from the scope ofthe embodiments encompassed by the appended claims.

What is claimed is:
 1. A system for virtually navigating and viewingWhole Slide Images (WSI), the system comprising: a virtual slide stage(VSS) having two or more sensors detecting user movement of a target,where the target is a slide that is distinct from a slide used to createthe WSI and the target enables a user to virtually navigate the WSI, thetarget being placed on a surface of the VSS, the user movement detectedby the two or more sensors resulting in target movement in the plane ofthe surface of the VSS, including detecting user rotation of the target;the VSS, in communication with a computer processor, computationallytransforming the detected user movement including the detected rotationfrom the two or more sensors into a plurality of user movement profilesof the target, the plurality of the user movement profiles beingprocessed using computational movement models to generate modeled usermovement data and rotational computations of the target; a connectorcomponent connecting the VSS to a user device, the connector componentconfigured to transmit the modeled user movement data from the VSSsensors and the user device, the transmitted output representing anapproximation of user movement of the target relative to the VSS; thecomputer processor, in communication with the VSS, computationallyprocessing the processed modeled user movement data to determine desiredmovement and rotation of an WSI image, wherein the computationallyprocessing includes processing the detected target rotation in the planeof the surface of the VSS; and the computer processor executing asoftware component causing the generated processed user movement data tobe relayed via a viewing application executing on the user device. 2.The system as in claim 1, wherein the VSS is configured with either: (i)the two or more sensors configured within the surface, or (ii) a cameramounted to the surface.
 3. The system as in claim 2, wherein the two ormore sensors possess sensitivity levels that enable detecting changes inposition of the target relative to the VSS, including detecting slightchanges in the position.
 4. The system as in claim 3, wherein thecomputer processor processes the change in horizontal and verticalposition of the target relative to the surface of the VSS.
 5. The systemas in claim 1, wherein the VSS is further coupled to an artificial lightsource enabling detection of user movement of the target, where thetarget is an opaque slide, and the two or more sensors are opticalsensors that detect the user movement of the opaque slide by sensinglight from the artificial light source.
 6. The system as in claim 1,wherein the target is a translucent slide, and the two or more sensorsare optical sensors that detect user movement of the translucent slideby sensing ambient light.
 7. The system as in claim 1, wherein the sideof the target is a blank slide, and the two or more sensors include atleast one infrared distance sensor that detects user movement of theblank slide by sensing physical positioning of the blank slide.
 8. Thesystem as in claim 1, wherein the target is an opaque slide, and the twoor more sensors detect user movement of the opaque slide via a camera;and wherein at least one of coloration and marking are applied tofacilitate the camera tracking and distinguishing the opaque slide fromthe VSS.
 9. The system as in claim 8, wherein the camera captures a newimage of the target and the computer processor calculates the usermovement of the target by comparing the captured new image to referencedata stored in computer memory communicatively coupled to the computerprocessor, where the reference data is a plurality of video framesrecorded from an earlier point in time.
 10. The system as in claim 8,wherein the camera captures a new image of the target and the computerprocessor calculates the user movement of the target by comparing thecaptured new image to reference data stored in computer memorycommunicatively coupled to the computer processor, where the referencedata is at least one of: an absolute field of view of an image from thecamera, or is relative to a demarcation physically drawn on a surface ofthe VSS.
 11. The system as in claim 1, wherein the VSS sensors aremagnetometers configured below the surface of the VSS, and the target ismagnetized, such that an rotational orientation and position are trackedby the magnetometers positioned below surface of the VSS.
 12. The systemas in claim 1, wherein a touchscreen or touchpad detects the usermovement on the surface of the VSS, rather than the target and the twoor more sensors.
 13. The system as in claim 1, further including: (a)one or more keys or buttons coupled to an input component that ismounted or otherwise connected to the VSS, the one or more keys orbuttons being at least one of physically-enabled or digitally-enabledcomponents, (b) a dial or potentiometer, and accept at least one of: (i)digital inputs that enable one or more fixed settings, and (ii) analoginputs that enable scrolling between discrete settings, and (c) at leastone of: gestures, camera detection, touchscreen, or touchpad.
 14. Thesystem as in claim 1, wherein the processing of the detected usermovement is performed by the computer processor either: (i) within theVSS, or (ii) within the user device.
 15. The system as in claim 1,wherein the computer processor is configured at the VSS, and theprocessed user movement data is transferred to the viewing applicationvia at least one of: (i) a native software or library, including adevice driver, and (ii) a networking component, including a web serveror websockets.
 16. The system as in claim 1, further comprising a modelcomponent configured to implement a model of movement of the VSSrespective to the user movement of the target, the model implemented toeither: (i) remain linear to the user movement of the target independentof magnification, (ii) geometrically scale to increase or decrease theresponsiveness of the viewing application relative to the user movement;or (iii) be a user-configured, non-linear, and non-geometrically.
 17. Amethod of virtually navigating and viewing Whole Slide Images (WSI), themethod comprising: detecting, by two or more sensors coupled to avirtual slide stage (VSS), user movement of a target placed on a surfaceof the VSS, the user movement detected by the two or more sensorsresulting in target movement in the plane of the surface of the VSS,including detecting rotation of the target; computationally transformingthe detected user movement including the detected rotation from the twoor more sensors into a plurality of movement profiles of the target, theplurality of the movement profiles being processed using computationalmovement models to generate modeled user movement data and rotationalcomputations of the target; transmitting the modeled user movement datafrom the VSS sensors; the transmitted output representing anapproximation of user movement of the target relative to the VSS;computationally processing the modeled user movement data to determinedesired movement of a WSI image, wherein the processing includesprocessing the detected target rotation of the WSI image in the plane ofthe surface of the VSS; and relaying the generated processed movementdata, via a viewing application configured on the user device.
 18. Adevice configured to navigate and view Whole Slide Images (WSI), thedevice comprising: a virtual slide stage (VSS) having two or moresensors detecting user movement of a target placed on a surface of theVSS, the user movement detected by the two or more sensors resulting intarget movement in the plane of the surface of the VSS, includingdetecting rotation of the target; an input, coupled to the VSS,providing movement control of the target; a communication connectionconnecting the VSS to a remote user device and transmitting output fromthe two or more VSS sensors and the input component to the user device,the transmitted output representing user movement of the target relativeto the VSS; the VSS, in communication with a computer processor,computationally processing the transmitted output into approximated userrotation predictions of the target, the approximated user rotationpredictions being transformed into a plurality of the user movementprofiles to generate modeled movement data and rotational computationsof the target; and the computer processor, in communication with theVSS, computationally processing the modeled user movement data androtational computations of the target to represent desired movement of aWSI image, the computer processor executing software, which causes thegenerated processed user movement data to be relayed via a viewingsoftware application executing on the user device, wherein thecomputationally processing includes processing the detected targetrotation in the plane of the surface of the VSS.